HL_6I7V_222

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

6I7V|1|CA|U|1173, 6I7V|1|CA|U|1174, 6I7V|1|CA|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_222 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3725

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6I7V|1|CA|G|1168
6I7V|1|CA|A|1169
6I7V|1|CA|C|1170
6I7V|1|CA|G|1171
6I7V|1|CA|C|1172
6I7V|1|CA|U|1173
6I7V|1|CA|U|1174
6I7V|1|CA|A|1175
6I7V|1|CA|U|1176
6I7V|1|CA|G|1177
6I7V|1|CA|C|1178
6I7V|1|CA|G|1179
6I7V|1|CA|U|1180
6I7V|1|CA|U|1181

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CM

50S ribosomal protein L15

Chain CS

50S ribosomal protein L21