HL_6I9R_009

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

6I9R|1|A|A|1991, 6I9R|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_009 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.272

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6I9R|1|A|G|1988
6I9R|1|A|C|1989
6I9R|1|A|G|1990
6I9R|1|A|A|1991
6I9R|1|A|C|1992
6I9R|1|A|A|1993
6I9R|1|A|A|1994
6I9R|1|A|A|1995
6I9R|1|A|C|1996

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial