HL_6I9R_012

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

6I9R|1|A|A|2110, 6I9R|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_012 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.186

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6I9R|1|A|G|2107
6I9R|1|A|G|2108
6I9R|1|A|A|2109
6I9R|1|A|A|2110
6I9R|1|A|C|2111
6I9R|1|A|A|2112
6I9R|1|A|G|2113
6I9R|1|A|C|2114

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial