HL_6I9R_015

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_015 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1519

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6I9R|1|A|C|2202
6I9R|1|A|G|2203
6I9R|1|A|U|2204
6I9R|1|A|U|2205
6I9R|1|A|C|2206
6I9R|1|A|A|2207
6I9R|1|A|A|2208
6I9R|1|A|G|2209

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial