HL_6I9R_025

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

6I9R|1|A|U|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_025 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1814

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6I9R|1|A|C|2612
6I9R|1|A|U|2613
6I9R|1|A|U|2614
6I9R|1|A|A|2615
6I9R|1|A|A|2616
6I9R|1|A|A|2617
6I9R|1|A|U|2618
6I9R|1|A|A|2619
6I9R|1|A|G|2620

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial