HL_6I9R_028

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

6I9R|1|A|G|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_028 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0896

The information below is about HL_4WF9_049

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6I9R|1|A|U|2812
6I9R|1|A|U|2813
6I9R|1|A|G|2814
6I9R|1|A|G|2815
6I9R|1|A|G|2816
6I9R|1|A|G|2817
6I9R|1|A|C|2818
6I9R|1|A|G|2819
6I9R|1|A|A|2820

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial