HL_6I9R_040

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAACACAAA

Length

10 nucleotides

Bulged bases

6I9R|1|B|U|1614, 6I9R|1|B|C|1619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_040 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.2724

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6I9R|1|B|U|1613
6I9R|1|B|U|1614
6I9R|1|B|A|1615
6I9R|1|B|A|1616
6I9R|1|B|C|1617
6I9R|1|B|A|1618
6I9R|1|B|C|1619
6I9R|1|B|A|1620
6I9R|1|B|A|1621
6I9R|1|B|A|1622

Current chains

Chain B

tRNA Val

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain P

Mitochondrial ribosomal protein L18, isoform CRA_b