HL_6ID1_005

3D structure

PDB id

6ID1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

6ID1|1|H|U|162, 6ID1|1|H|G|163, 6ID1|1|H|C|164, 6ID1|1|H|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ID1|1|H|G|158
6ID1|1|H|U|159
6ID1|1|H|A|160
6ID1|1|H|U|161
6ID1|1|H|U|162
6ID1|1|H|G|163
6ID1|1|H|C|164
6ID1|1|H|A|165
6ID1|1|H|G|166
6ID1|1|H|U|167
6ID1|1|H|A|168
6ID1|1|H|C|169
6ID1|1|H|C|170
6ID1|1|H|U|171
6ID1|1|H|C|172

Current chains

Chain H

U2snRNA

Nearby chains

Chain n

Small nuclear ribonucleoprotein G

Chain o

U2 small nuclear ribonucleoprotein A'

Chain p

U2 small nuclear ribonucleoprotein B''