HL_6IFO_003

3D structure

PDB id

6IFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IFO_003 not in the Motif Atlas

Geometric match to HL_5VW1_003

Geometric discrepancy: 0.1137

The information below is about HL_5VW1_003

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6IFO|1|C|U|72
6IFO|1|C|G|73
6IFO|1|C|A|74
6IFO|1|C|A|75
6IFO|1|C|A|76
6IFO|1|C|A|77

Current chains

Chain C

RNA (99-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1