3D structure

PDB id
6IFO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.31 Å

Loop

Sequence
ACCGAGUCGGU
Length
11 nucleotides
Bulged bases
6IFO|1|D|G|89, 6IFO|1|D|U|90
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6IFO_008 not in the Motif Atlas
Geometric match to HL_4ANG_001
Geometric discrepancy: 0.3818
The information below is about HL_4ANG_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34168.3
Basepair signature
cWW-cWW-F
Number of instances in this motif group
11

Unit IDs

6IFO|1|D|A|84
6IFO|1|D|C|85
6IFO|1|D|C|86
6IFO|1|D|G|87
6IFO|1|D|A|88
6IFO|1|D|G|89
6IFO|1|D|U|90
6IFO|1|D|C|91
6IFO|1|D|G|92
6IFO|1|D|G|93
6IFO|1|D|U|94

Current chains

Chain D
RNA (99-MER)

Nearby chains

Chain B
CRISPR-associated endonuclease Cas9/Csn1

Coloring options:


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