HL_6IP5_003

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_003 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.2232

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6IP5|1|1A|C|89
6IP5|1|1A|G|90
6IP5|1|1A|G|91
6IP5|1|1A|C|92
6IP5|1|1A|G|93
6IP5|1|1A|A|94
6IP5|1|1A|G|95

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13

Chain 2K

60S ribosomal protein L18

Chain 2U

60S ribosomal protein L27a

Chain 2i

60S ribosomal protein L36a

Chain zu

Transfer RNA; tRNA