6IP5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6IP5_001 | 1/1A/30:52 | No text annotation | ||
| HL_6IP5_002 | 1/1A/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6IP5_003 | 1/1A/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6IP5_005 | 1/1A/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6IP5_006 | 1/1A/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6IP5_007 | 1/1A/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6IP5_008 | 1/1A/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6IP5_009 | 1/1A/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6IP5_010 | 1/1A/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6IP5_011 | 1/1A/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6IP5_129 | 1/1A/1171:1190 | No text annotation | ||
| HL_6IP5_017 | 1/1A/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6IP5_018 | 1/1A/1363:1374 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6IP5_019 | 1/1A/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6IP5_022 | 1/1A/1480:1484 | No text annotation | geometric HL_8C3A_040 NA | |
| HL_6IP5_023 | 1/1A/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6IP5_024 | 1/1A/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6IP5_025 | 1/1A/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6IP5_026 | 1/1A/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6IP5_124 | 1/1A/1753:1777 | No text annotation | ||
| HL_6IP5_028 | 1/1A/1816:1823 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6IP5_029 | 1/1A/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6IP5_030 | 1/1A/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_6IP5_033 | 1/1A/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6IP5_034 | 1/1A/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6IP5_035 | 1/1A/2420:2426 | Mini UNCG | geometric HL_4TUW_002 HL_12626.2 | |
| HL_6IP5_036 | 1/1A/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6IP5_038 | 1/1A/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6IP5_040 | 1/1A/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6IP5_041 | 1/1A/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6IP5_042 | 1/1A/2664:2670 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_6IP5_043 | 1/1A/2704:2712 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6IP5_044 | 1/1A/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6IP5_045 | 1/1A/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6IP5_046 | 1/1A/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6IP5_047 | 1/1A/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6IP5_049 | 1/1A/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6IP5_050 | 1/1A/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6IP5_051 | 1/1A/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6IP5_052 | 1/1A/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6IP5_053 | 1/1A/3754:3769 | No text annotation | ||
| HL_6IP5_054 | 1/1A/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6IP5_055 | 1/1A/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6IP5_059 | 1/1A/4193:4201 | No text annotation | geometric HL_7A0S_052 HL_11974.2 | |
| HL_6IP5_125 | 1/1A/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_6IP5_061 | 1/1A/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6IP5_062 | 1/1A/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6IP5_063 | 1/1A/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6IP5_064 | 1/1A/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6IP5_065 | 1/1A/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_6IP5_066 | 1/1A/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6IP5_067 | 1/1A/4473:4482 | tRNA anticodon loop | geometric HL_3W3S_002 HL_81376.2 | |
| HL_6IP5_068 | 1/1A/4495:4505 | No text annotation | geometric HL_1KH6_003 HL_33487.1 | |
| HL_6IP5_069 | 1/1A/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_6IP5_070 | 1/1A/4603:4608 | GNRA | geometric HL_5J7L_010 NA | |
| HL_6IP5_071 | 1/1A/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6IP5_072 | 1/1A/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6IP5_074 | 1/1A/4907:4914 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_6IP5_075 | 1/1A/4975:4983 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_6IP5_077 | 1/1B/36:41 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_6IP5_078 | 1/1B/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6IP5_079 | 1/1C/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_6IP5_080 | 1/1C/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6IP5_081 | 1/1C/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6IP5_083 | 1/2m/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6IP5_085 | 1/2m/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6IP5_087 | 1/2m/288:295 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_6IP5_089 | 1/2m/377:387 | No text annotation | ||
| HL_6IP5_090 | 1/2m/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6IP5_091 | 1/2m/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6IP5_092 | 1/2m/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6IP5_131 | 1/2m/498:504 | No text annotation | homologous HL_8CRE_202 HL_89167.2 | |
| HL_6IP5_095 | 1/2m/566:584 | No text annotation | ||
| HL_6IP5_096 | 1/2m/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6IP5_132 | 1/2m/820:828 | No text annotation | homologous HL_8CRE_207 HL_11974.2 | |
| HL_6IP5_098 | 1/2m/833:841 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_6IP5_100 | 1/2m/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6IP5_101 | 1/2m/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6IP5_102 | 1/2m/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6IP5_104 | 1/2m/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6IP5_105 | 1/2m/1177:1184 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_6IP5_106 | 1/2m/1245:1254 | No text annotation | geometric HL_2ZNI_001 HL_75660.7 | |
| HL_6IP5_108 | 1/2m/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6IP5_109 | 1/2m/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6IP5_111 | 1/2m/1460:1466 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_6IP5_112 | 1/2m/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6IP5_113 | 1/2m/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6IP5_114 | 1/2m/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6IP5_133 | 1/2m/1847:1852 | No text annotation | ||
| HL_6IP5_120 | 1/zy/12:22 | No text annotation | homologous HL_4JYZ_001 NA | |
| HL_6IP5_121 | 1/zy/30:38 | tRNA anticodon loop | homologous HL_6UGG_005 HL_11974.2 | |
| HL_6IP5_122 | 1/zy/52:60 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_33597.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6IP5_004 | No text annotation | ||
| HL_6IP5_012 | Externally structured | ||
| HL_6IP5_013 | No text annotation | ||
| HL_6IP5_014 | No text annotation | ||
| HL_6IP5_015 | No text annotation | ||
| HL_6IP5_016 | No text annotation | ||
| HL_6IP5_123 | No text annotation | ||
| HL_6IP5_020 | No text annotation | ||
| HL_6IP5_021 | No text annotation | ||
| HL_6IP5_027 | No text annotation | ||
| HL_6IP5_031 | No text annotation | ||
| HL_6IP5_032 | No text annotation | ||
| HL_6IP5_037 | No text annotation | ||
| HL_6IP5_039 | No text annotation | ||
| HL_6IP5_048 | No text annotation | ||
| HL_6IP5_056 | No text annotation | ||
| HL_6IP5_057 | No text annotation | ||
| HL_6IP5_058 | No text annotation | ||
| HL_6IP5_060 | No text annotation | ||
| HL_6IP5_073 | No text annotation | ||
| HL_6IP5_076 | No text annotation | ||
| HL_6IP5_126 | No text annotation | ||
| HL_6IP5_082 | No text annotation | ||
| HL_6IP5_084 | No text annotation | ||
| HL_6IP5_086 | No text annotation | ||
| HL_6IP5_130 | No text annotation | ||
| HL_6IP5_088 | No text annotation | ||
| HL_6IP5_127 | No text annotation | ||
| HL_6IP5_093 | No text annotation | ||
| HL_6IP5_094 | No text annotation | ||
| HL_6IP5_097 | No text annotation | ||
| HL_6IP5_128 | No text annotation | ||
| HL_6IP5_099 | No text annotation | ||
| HL_6IP5_103 | No text annotation | ||
| HL_6IP5_107 | Anticodon loop related | ||
| HL_6IP5_110 | No text annotation | ||
| HL_6IP5_115 | No text annotation | ||
| HL_6IP5_116 | No text annotation | ||
| HL_6IP5_117 | No text annotation | ||
| HL_6IP5_118 | tRNA anticodon loop | ||
| HL_6IP5_119 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6IP5_001 | 1/1A/6:7, 1/1C/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6IP5_002 | 1/1A/12:14, 1/1C/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6IP5_003 | 1/1A/16:18, 1/1C/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6IP5_004 | 1/1A/26:27, 1/1A/55:58 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
| IL_6IP5_005 | 1/1A/81:88, 1/1A/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6IP5_006 | 1/1A/118:122, 1/1A/147:153 | No text annotation | ||
| IL_6IP5_007 | 1/1A/125:126, 1/1A/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6IP5_010 | 1/1A/182:189, 1/1A/252:255 | No text annotation | ||
| IL_6IP5_011 | 1/1A/195:196, 1/1A/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6IP5_012 | 1/1A/199:201, 1/1A/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6IP5_013 | 1/1A/339:342, 1/1C/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_55206.1 | |
| IL_6IP5_014 | 1/1A/348:350, 1/1C/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6IP5_015 | 1/1A/387:390, 1/1A/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6IP5_016 | 1/1A/415:421, 1/1C/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_6IP5_017 | 1/1A/443:446, 1/1A/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
| IL_6IP5_018 | 1/1A/448:450, 1/1A/1297:1298 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_6IP5_020 | 1/1A/462:464, 1/1A/691:693 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_01003.2 | |
| IL_6IP5_021 | 1/1A/466:472, 1/1A/682:689 | No text annotation | ||
| IL_6IP5_026 | 1/1A/508:510, 1/1A/649:650 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_6IP5_028 | 1/1A/709:710, 1/1A/1286:1288 | Single bulged G | geometric IL_6CZR_148 NA | |
| IL_6IP5_029 | 1/1A/723:724, 1/1A/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6IP5_030 | 1/1A/727:731, 1/1A/938:939 | No text annotation | ||
| IL_6IP5_031 | 1/1A/732:735, 1/1A/928:937 | No text annotation | ||
| IL_6IP5_032 | 1/1A/737:740, 1/1A/925:926 | No text annotation | ||
| IL_6IP5_034 | 1/1A/745:752, 1/1A/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_6IP5_035 | 1/1A/1073:1074, 1/1A/1237:1239 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_6IP5_037 | 1/1A/1082:1084, 1/1A/1213:1217 | Isolated non-canonical cWW pair | geometric IL_5ZTM_001 IL_01003.2 | |
| IL_6IP5_038 | 1/1A/1086:1087, 1/1A/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_6IP5_041 | 1/1A/1244:1245, 1/1A/1265:1267 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6IP5_042 | 1/1A/1357:1360, 1/1A/1379:1382 | No text annotation | ||
| IL_6IP5_243 | 1/1A/1357:1361, 1/1A/1376:1382 | No text annotation | ||
| IL_6IP5_043 | 1/1A/1360:1361, 1/1A/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_6IP5_044 | 1/1A/1425:1429, 1/1A/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_6IP5_045 | 1/1A/1431:1434, 1/1A/1450:1453 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6IP5_046 | 1/1A/1467:1468, 1/1A/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6IP5_047 | 1/1A/1474:1476, 1/1A/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_6IP5_049 | 1/1A/1520:1522, 1/1A/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6IP5_050 | 1/1A/1522:1526, 1/1A/1648:1655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6IP5_051 | 1/1A/1545:1546, 1/1A/1612:1614 | Single bulged A | geometric IL_7A0S_016 IL_14190.2 | |
| IL_6IP5_052 | 1/1A/1550:1551, 1/1A/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6IP5_053 | 1/1A/1551:1555, 1/1A/1572:1576 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6IP5_054 | 1/1A/1586:1589, 1/1A/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6IP5_055 | 1/1A/1590:1592, 1/1A/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6IP5_056 | 1/1A/1624:1626, 1/1A/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6IP5_057 | 1/1A/1671:1673, 1/1A/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6IP5_058 | 1/1A/1686:1688, 1/1A/1848:1851 | No text annotation | ||
| IL_6IP5_060 | 1/1A/1723:1725, 1/1A/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6IP5_061 | 1/1A/1732:1737, 1/1A/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6IP5_062 | 1/1A/1737:1738, 1/1A/1790:1792 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6IP5_063 | 1/1A/1739:1744, 1/1A/1786:1789 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6IP5_064 | 1/1A/1745:1749, 1/1A/1781:1785 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_6IP5_065 | 1/1A/1749:1751, 1/1A/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6IP5_066 | 1/1A/1753:1756, 1/1A/1775:1777 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6IP5_067 | 1/1A/1814:1816, 1/1A/1823:1824 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6IP5_068 | 1/1A/1858:1860, 1/1A/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6IP5_070 | 1/1A/1905:1909, 1/1A/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6IP5_071 | 1/1A/1911:1918, 1/1A/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6IP5_072 | 1/1A/1918:1920, 1/1A/2063:2064 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_6IP5_073 | 1/1A/1920:1922, 1/1A/2062:2063 | Single bulged C | geometric IL_4V88_384 NA | |
| IL_6IP5_074 | 1/1A/1926:1933, 1/1A/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6IP5_075 | 1/1A/1933:1944, 1/1A/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6IP5_076 | 1/1A/1946:1948, 1/1A/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6IP5_078 | 1/1A/2083:2085, 1/1A/2272:2273 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_6IP5_079 | 1/1A/2290:2292, 1/1A/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6IP5_080 | 1/1A/2299:2301, 1/1A/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6IP5_081 | 1/1A/2302:2309, 1/1A/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6IP5_082 | 1/1A/2312:2314, 1/1A/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_6IP5_083 | 1/1A/2358:2364, 1/1A/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6IP5_084 | 1/1A/2415:2420, 1/1A/2426:2429 | No text annotation | ||
| IL_6IP5_085 | 1/1A/2446:2450, 1/1A/2509:2514 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6IP5_086 | 1/1A/2477:2479, 1/1A/2499:2500 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6IP5_088 | 1/1A/2542:2547, 1/1A/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_76400.1 | |
| IL_6IP5_089 | 1/1A/2589:2593, 1/1A/2752:2756 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_6IP5_090 | 1/1A/2613:2614, 1/1A/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6IP5_091 | 1/1A/2614:2615, 1/1A/2722:2724 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6IP5_092 | 1/1A/2646:2648, 1/1A/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_6IP5_093 | 1/1A/2651:2653, 1/1A/2681:2682 | Single bulged G | geometric IL_2IZN_001 IL_28408.2 | |
| IL_6IP5_094 | 1/1A/2656:2662, 1/1A/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6IP5_095 | 1/1A/2832:2838, 1/1A/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6IP5_096 | 1/1A/2844:2846, 1/1A/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6IP5_263 | 1/1A/2847:2850, 1/1A/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8P9A_304 IL_74641.2 | |
| IL_6IP5_098 | 1/1A/2850:2855, 1/1A/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6IP5_099 | 1/1A/2867:2872, 1/1A/2877:2883 | No text annotation | ||
| IL_6IP5_100 | 1/1A/2889:2891, 1/1A/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_6IP5_101 | 1/1A/2896:2897, 1/1A/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6IP5_102 | 1/1A/3632:3633, 1/1A/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6IP5_103 | 1/1A/3660:3665, 1/1A/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6IP5_104 | 1/1A/3700:3703, 1/1A/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6IP5_105 | 1/1A/3704:3705, 1/1A/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6IP5_106 | 1/1A/3708:3714, 1/1A/3739:3742 | No text annotation | ||
| IL_6IP5_107 | 1/1A/3714:3721, 1/1A/3732:3739 | No text annotation | ||
| IL_6IP5_108 | 1/1A/3780:3781, 1/1A/3811:3814 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.2 | |
| IL_6IP5_109 | 1/1A/3781:3792, 1/1A/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6IP5_110 | 1/1A/3895:3898, 1/1A/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6IP5_111 | 1/1A/3900:3902, 1/1A/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6IP5_112 | 1/1A/3913:3915, 1/1A/4388:4389 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_6IP5_113 | 1/1A/3915:3917, 1/1A/4384:4388 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_6IP5_114 | 1/1A/3927:3929, 1/1A/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6IP5_115 | 1/1A/4081:4088, 1/1A/4161:4165 | No text annotation | ||
| IL_6IP5_249 | 1/1A/4191:4192, 1/1A/4202:4204 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_6IP5_117 | 1/1A/4243:4245, 1/1A/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6IP5_118 | 1/1A/4291:4294, 1/1A/4316:4318 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_6IP5_119 | 1/1A/4295:4297, 1/1A/4314:4315 | Single stack bend | geometric IL_4WF9_089 IL_15011.2 | |
| IL_6IP5_120 | 1/1A/4297:4298, 1/1A/4312:4314 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6IP5_121 | 1/1A/4347:4350, 1/1A/4364:4365 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_6IP5_122 | 1/1A/4403:4405, 1/1A/4439:4440 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_6IP5_123 | 1/1A/4405:4407, 1/1A/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.2 | |
| IL_6IP5_124 | 1/1A/4412:4416, 1/1A/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6IP5_125 | 1/1A/4453:4454, 1/1A/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6IP5_126 | 1/1A/4456:4458, 1/1A/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6IP5_127 | 1/1A/4458:4459, 1/1A/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6IP5_128 | 1/1A/4466:4468, 1/1A/4489:4491 | No text annotation | geometric IL_1N33_070 NA | |
| IL_6IP5_250 | 1/1A/4466:4470, 1/1A/4485:4491 | No text annotation | ||
| IL_6IP5_129 | 1/1A/4468:4470, 1/1A/4485:4489 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_6IP5_130 | 1/1A/4537:4538, 1/1A/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6IP5_131 | 1/1A/4580:4585, 1/1A/4717:4723 | No text annotation | ||
| IL_6IP5_132 | 1/1A/4590:4592, 1/1A/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6IP5_133 | 1/1A/4596:4603, 1/1A/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6IP5_134 | 1/1A/4624:4629, 1/1A/4669:4673 | No text annotation | ||
| IL_6IP5_135 | 1/1A/4629:4637, 1/1A/4662:4669 | No text annotation | ||
| IL_6IP5_136 | 1/1A/4638:4640, 1/1A/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_011 IL_10892.2 | |
| IL_6IP5_137 | 1/1A/4641:4642, 1/1A/4655:4658 | Multiple bulged bases | geometric IL_4WF9_103 IL_44609.2 | |
| IL_6IP5_138 | 1/1A/4680:4685, 1/1A/4705:4711 | No text annotation | geometric IL_4W90_002 IL_74322.2 | |
| IL_6IP5_264 | 1/1A/4755:4765, 1/1A/4869:4878 | No text annotation | ||
| IL_6IP5_142 | 1/1A/4891:4896, 1/1A/4924:4929 | No text annotation | ||
| IL_6IP5_144 | 1/1A/4972:4975, 1/1A/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6IP5_145 | 1/1A/4992:4994, 1/1A/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.2 | |
| IL_6IP5_147 | 1/1A/5000:5002, 1/1A/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6IP5_148 | 1/1A/5003:5009, 1/1A/5039:5044 | No text annotation | ||
| IL_6IP5_149 | 1/1A/5012:5017, 1/1A/5032:5036 | No text annotation | ||
| IL_6IP5_150 | 1/1B/15:16, 1/1B/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6IP5_151 | 1/1B/21:27, 1/1B/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6IP5_152 | 1/1B/28:31, 1/1B/46:51 | No text annotation | ||
| IL_6IP5_153 | 1/1B/32:36, 1/1B/41:45 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_6IP5_265 | 1/1B/71:78, 1/1B/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8OI5_139 IL_62167.2 | |
| IL_6IP5_155 | 1/1B/79:81, 1/1B/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.2 | |
| IL_6IP5_156 | 1/1B/82:85, 1/1B/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6IP5_157 | 1/1C/64:66, 1/1C/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6IP5_158 | 1/2m/23:25, 1/2m/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_01003.2 | |
| IL_6IP5_160 | 1/2m/34:36, 1/2m/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6IP5_161 | 1/2m/37:40, 1/2m/514:518 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_6IP5_162 | 1/2m/41:47, 1/2m/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6IP5_163 | 1/2m/49:51, 1/2m/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6IP5_164 | 1/2m/57:62, 1/2m/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6IP5_165 | 1/2m/63:68, 1/2m/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6IP5_166 | 1/2m/108:110, 1/2m/351:353 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_6IP5_252 | 1/2m/108:112, 1/2m/349:353 | Partly complementary | geometric IL_8D29_010 IL_71154.2 | |
| IL_6IP5_167 | 1/2m/110:112, 1/2m/349:351 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.1 | |
| IL_6IP5_168 | 1/2m/112:115, 1/2m/348:349 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.2 | |
| IL_6IP5_253 | 1/2m/112:121, 1/2m/343:349 | No text annotation | ||
| IL_6IP5_169 | 1/2m/115:121, 1/2m/343:348 | No text annotation | ||
| IL_6IP5_170 | 1/2m/121:123, 1/2m/342:343 | Single stack bend | geometric IL_4V9F_081 IL_15011.2 | |
| IL_6IP5_171 | 1/2m/145:151, 1/2m/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6IP5_172 | 1/2m/152:154, 1/2m/164:166 | Isolated cWH basepair | geometric IL_4KQ0_004 IL_10892.2 | |
| IL_6IP5_173 | 1/2m/186:192, 1/2m/207:213 | No text annotation | ||
| IL_6IP5_175 | 1/2m/317:321, 1/2m/330:333 | No text annotation | ||
| IL_6IP5_176 | 1/2m/359:364, 1/2m/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6IP5_177 | 1/2m/366:371, 1/2m/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_6IP5_178 | 1/2m/411:413, 1/2m/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6IP5_179 | 1/2m/437:439, 1/2m/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6IP5_180 | 1/2m/459:461, 1/2m/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6IP5_181 | 1/2m/487:489, 1/2m/511:512 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_6IP5_182 | 1/2m/491:495, 1/2m/508:509 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_6IP5_183 | 1/2m/495:496, 1/2m/506:508 | Single bulged G | homologous IL_8C3A_417 NA | |
| IL_6IP5_186 | 1/2m/599:608, 1/2m/635:637 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6IP5_187 | 1/2m/611:617, 1/2m/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6IP5_188 | 1/2m/663:665, 1/2m/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6IP5_189 | 1/2m/665:671, 1/2m/1161:1162 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_6IP5_190 | 1/2m/673:675, 1/2m/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6IP5_191 | 1/2m/676:681, 1/2m/1024:1029 | No text annotation | geometric IL_8ZA4_001 NA | |
| IL_6IP5_266 | 1/2m/802:803, 1/2m/860:863 | No text annotation | homologous IL_8P9A_412 IL_73108.2 | |
| IL_6IP5_193 | 1/2m/805:807, 1/2m/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6IP5_194 | 1/2m/807:815, 1/2m/849:856 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6IP5_198 | 1/2m/922:923, 1/2m/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_6IP5_199 | 1/2m/925:927, 1/2m/1014:1017 | Isolated cWH basepair | geometric IL_2H1M_003 IL_10892.2 | |
| IL_6IP5_200 | 1/2m/927:931, 1/2m/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6IP5_201 | 1/2m/931:935, 1/2m/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6IP5_202 | 1/2m/942:945, 1/2m/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6IP5_203 | 1/2m/952:956, 1/2m/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6IP5_267 | 1/2m/1042:1047, 1/2m/1071:1073 | No text annotation | homologous IL_8CRE_437 IL_31359.1 | |
| IL_6IP5_205 | 1/2m/1047:1051, 1/2m/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6IP5_206 | 1/2m/1091:1093, 1/2m/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6IP5_207 | 1/2m/1098:1101, 1/2m/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6IP5_208 | 1/2m/1101:1103, 1/2m/1129:1131 | Isolated non-canonical cWW pair | geometric IL_1MFQ_003 IL_01003.2 | |
| IL_6IP5_209 | 1/2m/1108:1110, 1/2m/1123:1124 | Minor groove platform | geometric IL_4LFB_004 IL_34520.2 | |
| IL_6IP5_210 | 1/2m/1167:1175, 1/2m/1186:1192 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6IP5_211 | 1/2m/1203:1205, 1/2m/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.2 | |
| IL_6IP5_212 | 1/2m/1206:1208, 1/2m/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6IP5_213 | 1/2m/1214:1217, 1/2m/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6IP5_214 | 1/2m/1230:1232, 1/2m/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6IP5_215 | 1/2m/1235:1236, 1/2m/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6IP5_216 | 1/2m/1270:1272, 1/2m/1510:1512 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.2 | |
| IL_6IP5_258 | 1/2m/1281:1294, 1/2m/1305:1316 | No text annotation | ||
| IL_6IP5_217 | 1/2m/1325:1327, 1/2m/1502:1503 | Single bulged U | geometric IL_4LFB_042 IL_97561.2 | |
| IL_6IP5_218 | 1/2m/1329:1333, 1/2m/1498:1500 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_6IP5_259 | 1/2m/1329:1335, 1/2m/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6IP5_219 | 1/2m/1333:1335, 1/2m/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6IP5_220 | 1/2m/1337:1338, 1/2m/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6IP5_221 | 1/2m/1347:1349, 1/2m/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6IP5_222 | 1/2m/1363:1365, 1/2m/1374:1375 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_6IP5_223 | 1/2m/1395:1399, 1/2m/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_6IP5_260 | 1/2m/1402:1419, 1/2m/1428:1444 | No text annotation | ||
| IL_6IP5_224 | 1/2m/1453:1456, 1/2m/1470:1475 | No text annotation | ||
| IL_6IP5_225 | 1/2m/1537:1539, 1/2m/1594:1596 | Isolated non-canonical cWW pair | geometric IL_5MWI_003 IL_01003.2 | |
| IL_6IP5_261 | 1/2m/1541:1550, 1/2m/1582:1592 | No text annotation | ||
| IL_6IP5_226 | 1/2m/1550:1558, 1/2m/1577:1582 | No text annotation | homologous IL_8CRE_463 IL_22564.1 | |
| IL_6IP5_228 | 1/2m/1604:1610, 1/2m/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6IP5_229 | 1/2m/1700:1702, 1/2m/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6IP5_230 | 1/2m/1702:1705, 1/2m/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6IP5_231 | 1/2m/1706:1708, 1/2m/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6IP5_232 | 1/2m/1708:1711, 1/2m/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6IP5_233 | 1/2m/1714:1717, 1/2m/1816:1819 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_6IP5_262 | 1/2m/1714:1720, 1/2m/1813:1819 | No text annotation | ||
| IL_6IP5_234 | 1/2m/1717:1720, 1/2m/1813:1816 | Double sheared | geometric IL_3DIL_002 IL_58355.2 | |
| IL_6IP5_235 | 1/2m/1720:1722, 1/2m/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6IP5_236 | 1/2m/1729:1731, 1/2m/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6IP5_237 | 1/2m/1733:1736, 1/2m/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6IP5_238 | 1/2m/1739:1741, 1/2m/1793:1795 | Isolated non-canonical cWW pair | geometric IL_5TBW_008 NA | |
| IL_6IP5_239 | 1/2m/1742:1746, 1/2m/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6IP5_008 | No text annotation | ||
| IL_6IP5_009 | Single stack bend | ||
| IL_6IP5_242 | Single stack bend | ||
| IL_6IP5_019 | Single bulged C | ||
| IL_6IP5_022 | Major groove intercalation | ||
| IL_6IP5_023 | Minor groove platform | ||
| IL_6IP5_024 | No text annotation | ||
| IL_6IP5_025 | Isolated non-canonical cWW pair | ||
| IL_6IP5_027 | No text annotation | ||
| IL_6IP5_033 | No text annotation | ||
| IL_6IP5_036 | No text annotation | ||
| IL_6IP5_039 | No text annotation | ||
| IL_6IP5_040 | Isolated non-canonical cWW contact | ||
| IL_6IP5_048 | No text annotation | ||
| IL_6IP5_059 | No text annotation | ||
| IL_6IP5_069 | No text annotation | ||
| IL_6IP5_077 | Kink-turn | ||
| IL_6IP5_244 | No text annotation | ||
| IL_6IP5_087 | No text annotation | ||
| IL_6IP5_245 | Tandem non-canonical cWW pairs | ||
| IL_6IP5_246 | No text annotation | ||
| IL_6IP5_097 | No text annotation | ||
| IL_6IP5_247 | No text annotation | ||
| IL_6IP5_248 | No text annotation | ||
| IL_6IP5_116 | No text annotation | ||
| IL_6IP5_139 | Isolated non-canonical cWW pair | ||
| IL_6IP5_251 | No text annotation | ||
| IL_6IP5_140 | No text annotation | ||
| IL_6IP5_141 | No text annotation | ||
| IL_6IP5_143 | Single bulged C | ||
| IL_6IP5_146 | No text annotation | ||
| IL_6IP5_154 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | ||
| IL_6IP5_159 | Isolated non-canonical cWW pair | ||
| IL_6IP5_174 | No text annotation | ||
| IL_6IP5_184 | Stack and bulge | ||
| IL_6IP5_254 | No text annotation | ||
| IL_6IP5_185 | Single stack bend | ||
| IL_6IP5_192 | No text annotation | ||
| IL_6IP5_195 | No text annotation | ||
| IL_6IP5_196 | No text annotation | ||
| IL_6IP5_197 | No text annotation | ||
| IL_6IP5_255 | No text annotation | ||
| IL_6IP5_204 | No text annotation | ||
| IL_6IP5_256 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6IP5_257 | No text annotation | ||
| IL_6IP5_227 | Isolated non-canonical cWW pair | ||
| IL_6IP5_240 | No text annotation | ||
| IL_6IP5_241 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6IP5_001 | 1/1A/112:116, 1/1A/155:160, 1/1A/275:278 | No text annotation | ||
| J3_6IP5_042 | 1/1A/351:367, 1/1A/374:379, 1/1C/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_6IP5_002 | 1/1A/380:387, 1/1A/414:415, 1/1C/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6IP5_031 | 1/1A/380:390, 1/1A/401:415, 1/1C/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6IP5_003 | 1/1A/712:713, 1/1A/955:976, 1/1A/1278:1284 | No text annotation | ||
| J3_6IP5_004 | 1/1A/1531:1537, 1/1A/1622:1624, 1/1A/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6IP5_005 | 1/1A/1546:1548, 1/1A/1580:1584, 1/1A/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6IP5_006 | 1/1A/1726:1727, 1/1A/1802:1806, 1/1A/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_6IP5_007 | 1/1A/2393:2399, 1/1A/2805:2807, 1/1A/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6IP5_008 | 1/1A/2402:2405, 1/1A/2785:2791, 1/1A/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6IP5_009 | 1/1A/2440:2445, 1/1A/2515:2519, 1/1A/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6IP5_033 | 1/1A/2451:2456, 1/1A/2465:2476, 1/1A/2501:2508 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_6IP5_034 | 1/1A/2549:2555, 1/1A/2572:2575, 1/1A/2757:2770 | No text annotation | ||
| J3_6IP5_010 | 1/1A/2575:2576, 1/1A/2585:2589, 1/1A/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6IP5_035 | 1/1A/2598:2602, 1/1A/2737:2738, 1/1A/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6IP5_011 | 1/1A/3937:3939, 1/1A/4074:4078, 1/1A/4168:4173 | No text annotation | geometric J3_7A0S_009 J3_17460.1 | |
| J3_6IP5_036 | 1/1A/4091:4097, 1/1A/4112:4129, 1/1A/4155:4158 | No text annotation | ||
| J3_6IP5_037 | 1/1A/4228:4230, 1/1A/4331:4342, 1/1A/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6IP5_012 | 1/1A/4241:4243, 1/1A/4267:4269, 1/1A/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6IP5_013 | 1/1A/4463:4466, 1/1A/4491:4493, 1/1A/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6IP5_038 | 1/1A/4748:4754, 1/1A/4879:4890, 1/1A/4930:4951 | No text annotation | ||
| J3_6IP5_014 | 1/1A/4970:4972, 1/1A/4986:4991, 1/1A/5060:5063 | No text annotation | ||
| J3_6IP5_015 | 1/1B/9:14, 1/1B/65:66, 1/1B/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6IP5_016 | 1/1C/44:45, 1/1C/58:64, 1/1C/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6IP5_017 | 1/2m/40:41, 1/2m/481:487, 1/2m/512:514 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_6IP5_018 | 1/2m/682:685, 1/2m/917:922, 1/2m/1022:1023 | No text annotation | ||
| J3_6IP5_039 | 1/2m/682:685, 1/2m/917:923, 1/2m/1019:1023 | No text annotation | ||
| J3_6IP5_019 | 1/2m/816:819, 1/2m/829:831, 1/2m/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6IP5_020 | 1/2m/938:941, 1/2m/985:993, 1/2m/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6IP5_021 | 1/2m/1094:1096, 1/2m/1136:1140, 1/2m/1147:1151 | No text annotation | ||
| J3_6IP5_022 | 1/2m/1218:1221, 1/2m/1645:1651, 1/2m/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6IP5_023 | 1/2m/1225:1228, 1/2m/1530:1532, 1/2m/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6IP5_024 | 1/2m/1237:1245, 1/2m/1254:1266, 1/2m/1516:1520 | No text annotation | ||
| J3_6IP5_043 | 1/2m/1272:1277, 1/2m/1320:1324, 1/2m/1504:1510 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_6IP5_026 | 1/2m/1340:1345, 1/2m/1384:1389, 1/2m/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_6IP5_027 | 1/2m/1350:1351, 1/2m/1360:1363, 1/2m/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6IP5_028 | 1/2m/1391:1395, 1/2m/1450:1453, 1/2m/1475:1479 | No text annotation | ||
| J3_6IP5_041 | 1/2m/1391:1395, 1/2m/1450:1456, 1/2m/1470:1479 | No text annotation | ||
| J3_6IP5_029 | 1/2m/1532:1536, 1/2m/1597:1604, 1/2m/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J4_6IP5_001 | 1/1A/111:112, 1/1A/278:283, 1/1A/304:311, 1/1A/326:330 | No text annotation | ||
| J4_6IP5_002 | 1/1A/196:199, 1/1A/215:222, 1/1A/226:228, 1/1A/240:244 | No text annotation | ||
| J4_6IP5_003 | 1/1A/981:984, 1/1A/1069:1072, 1/1A/1240:1243, 1/1A/1268:1273 | No text annotation | ||
| J4_6IP5_004 | 1/1A/2365:2371, 1/1A/2389:2391, 1/1A/2824:2829, 1/1A/3856:3857 | No text annotation | ||
| J4_6IP5_015 | 1/1A/2406:2410, 1/1A/2434:2439, 1/1A/2538:2539, 1/1A/2777:2784 | No text annotation | homologous J4_8CRE_004 NA | |
| J4_6IP5_006 | 1/1A/2618:2620, 1/1A/2636:2642, 1/1A/2692:2698, 1/1A/2718:2719 | No text annotation | ||
| J4_6IP5_007 | 1/1A/3634:3638, 1/1A/3650:3656, 1/1A/3688:3694, 1/1A/3821:3826 | No text annotation | ||
| J4_6IP5_008 | 1/1A/3696:3698, 1/1A/3752:3753, 1/1A/3770:3780, 1/1A/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6IP5_009 | 1/1A/4231:4235, 1/1A/4289:4291, 1/1A/4318:4319, 1/1A/4328:4330 | No text annotation | ||
| J4_6IP5_010 | 1/1A/4587:4590, 1/1A/4620:4621, 1/1A/4676:4679, 1/1A/4712:4715 | No text annotation | ||
| J4_6IP5_016 | 1/2m/98:106, 1/2m/355:357, 1/2m/405:409, 1/2m/431:432 | No text annotation | homologous J4_8CRE_021 J4_15241.2 | |
| J4_6IP5_012 | 1/2m/671:673, 1/2m/1032:1037, 1/2m/1078:1089, 1/2m/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_6IP5_017 | 1/zy/7:10, 1/zy/24:25, 1/zy/43:48, 1/zy/64:65 | tRNA junction | homologous J4_4QEI_001 J4_35610.2 | |
| J5_6IP5_010 | 1/1A/20:21, 1/1C/35:42, 1/1C/101:106, 1/1C/113:114, 1/1C/136:137 | No text annotation | ||
| J5_6IP5_002 | 1/1A/1335:1340, 1/1A/1516:1519, 1/1A/1658:1661, 1/1A/2288:2290, 1/1A/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6IP5_011 | 1/1A/2847:2863, 1/1A/2887:2888, 1/1A/3613:3614, 1/1A/3618:3626, 1/1A/3835:3841 | No text annotation | ||
| J5_6IP5_004 | 1/1A/2850:2863, 1/1A/2887:2888, 1/1A/3613:3614, 1/1A/3618:3626, 1/1A/3835:3840 | No text annotation | ||
| J5_6IP5_005 | 1/1A/3902:3910, 1/1A/4392:4403, 1/1A/4440:4453, 1/1A/4528:4534, 1/1A/4552:4558 | No text annotation | ||
| J5_6IP5_006 | 1/1A/3920:3923, 1/1A/4188:4191, 1/1A/4204:4205, 1/1A/4227:4228, 1/1A/4375:4381 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_6IP5_007 | 1/2m/30:34, 1/2m/521:527, 1/2m/558:565, 1/2m/585:595, 1/2m/641:644 | No text annotation | ||
| J5_6IP5_008 | 1/2m/53:56, 1/2m/89:96, 1/2m/434:436, 1/2m/457:459, 1/2m/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6IP5_009 | 1/2m/123:144, 1/2m/175:185, 1/2m/214:219, 1/2m/302:314, 1/2m/336:342 | No text annotation | ||
| J6_6IP5_001 | 1/1A/21:26, 1/1A/58:67, 1/1A/74:78, 1/1A/105:109, 1/1A/332:339, 1/1C/33:35 | No text annotation | ||
| J6_6IP5_002 | 1/1A/1352:1355, 1/1A/1384:1388, 1/1A/1395:1399, 1/1A/1418:1421, 1/1A/1464:1466, 1/1A/1499:1504 | No text annotation | ||
| J6_6IP5_003 | 1/1A/3920:3923, 1/1A/4188:4191, 1/1A/4204:4205, 1/1A/4227:4230, 1/1A/4331:4342, 1/1A/4370:4381 | No text annotation | ||
| J7_6IP5_001 | 1/1A/1666:1671, 1/1A/1684:1685, 1/1A/1852:1855, 1/1A/1879:1884, 1/1A/1895:1899, 1/1A/2077:2078, 1/1A/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6IP5_030 | No text annotation | ||
| J3_6IP5_032 | No text annotation | ||
| J3_6IP5_025 | No text annotation | ||
| J3_6IP5_040 | No text annotation | ||
| J4_6IP5_005 | No text annotation | ||
| J4_6IP5_011 | No text annotation | ||
| J4_6IP5_013 | tRNA junction | ||
| J4_6IP5_014 | tRNA junction | ||
| J5_6IP5_001 | No text annotation | ||
| J5_6IP5_003 | No text annotation |
Coloring options: