HL_6IP5_036

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_036 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2102

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP5|1|1A|C|2458
6IP5|1|1A|G|2459
6IP5|1|1A|A|2460
6IP5|1|1A|G|2461
6IP5|1|1A|C|2462
6IP5|1|1A|G|2463

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2H

60S ribosomal protein L15

Chain 2d

60S ribosomal protein L37