HL_6IP5_038

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6IP5|1|1A|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_038 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.2178

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6IP5|1|1A|G|2523
6IP5|1|1A|U|2524
6IP5|1|1A|U|2525
6IP5|1|1A|C|2526
6IP5|1|1A|A|2527
6IP5|1|1A|G|2528
6IP5|1|1A|A|2529
6IP5|1|1A|U|2530
6IP5|1|1A|C|2531
6IP5|1|1A|C|2532

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2R

60S ribosomal protein L23a

Chain 2a

60S ribosomal protein L34