HL_6IP5_039

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

6IP5|1|1A|C|2563

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_039 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2766

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP5|1|1A|C|2561
6IP5|1|1A|G|2562
6IP5|1|1A|C|2563
6IP5|1|1A|G|2564
6IP5|1|1A|A|2565
6IP5|1|1A|G|2566

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains