HL_6IP5_041

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6IP5|1|1A|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.27

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6IP5|1|1A|G|2624
6IP5|1|1A|U|2625
6IP5|1|1A|U|2626
6IP5|1|1A|C|2627
6IP5|1|1A|U|2628
6IP5|1|1A|C|2629
6IP5|1|1A|U|2630
6IP5|1|1A|U|2631
6IP5|1|1A|U|2632

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2O

60S ribosomal protein L22