HL_6IP5_053

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAACUAUGACUC

Length

16 nucleotides

Bulged bases

6IP5|1|1A|A|3760, 6IP5|1|1A|A|3766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|G|3754
6IP5|1|1A|G|3755
6IP5|1|1A|A|3756
6IP5|1|1A|G|3757
6IP5|1|1A|U|3758
6IP5|1|1A|A|3759
6IP5|1|1A|A|3760
6IP5|1|1A|C|3761
6IP5|1|1A|U|3762
6IP5|1|1A|A|3763
6IP5|1|1A|U|3764
6IP5|1|1A|G|3765
6IP5|1|1A|A|3766
6IP5|1|1A|C|3767
6IP5|1|1A|U|3768
6IP5|1|1A|C|3769

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA

Chain zy

Transfer RNA; tRNA