HL_6IP5_056
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUU
- Length
- 68 nucleotides
- Bulged bases
- 6IP5|1|1A|A|3947, 6IP5|1|1A|A|3960, 6IP5|1|1A|A|3962, 6IP5|1|1A|A|3963, 6IP5|1|1A|G|4034, 6IP5|1|1A|G|4035, 6IP5|1|1A|U|4044, 6IP5|1|1A|C|4059
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP5|1|1A|A|3945
6IP5|1|1A|G|3946
6IP5|1|1A|A|3947
6IP5|1|1A|C|3948
6IP5|1|1A|A|3949
6IP5|1|1A|U|3950
6IP5|1|1A|G|3951
6IP5|1|1A|A|3952
6IP5|1|1A|G|3953
6IP5|1|1A|A|3954
6IP5|1|1A|G|3955
6IP5|1|1A|G|3956
6IP5|1|1A|U|3957
6IP5|1|1A|G|3958
6IP5|1|1A|U|3959
6IP5|1|1A|A|3960
6IP5|1|1A|G|3961
6IP5|1|1A|A|3962
6IP5|1|1A|A|3963
6IP5|1|1A|U|3964
6IP5|1|1A|A|3965
6IP5|1|1A|A|3966
6IP5|1|1A|G|3967
6IP5|1|1A|U|3968
6IP5|1|1A|G|3969
6IP5|1|1A|G|3970
6IP5|1|1A|G|3971
6IP5|1|1A|A|3972
6IP5|1|1A|G|3973
6IP5|1|1A|G|3974
6IP5|1|1A|C|3975
6IP5|1|1A|C|3976
6IP5|1|1A|C|3977
6IP5|1|1A|G|4034
6IP5|1|1A|G|4035
6IP5|1|1A|G|4036
6IP5|1|1A|C|4037
6IP5|1|1A|C|4038
6IP5|1|1A|G|4039
6IP5|1|1A|C|4040
6IP5|1|1A|C|4041
6IP5|1|1A|G|4042
6IP5|1|1A|G|4043
6IP5|1|1A|U|4044
6IP5|1|1A|G|4045
6IP5|1|1A|A|4046
6IP5|1|1A|A|4047
6IP5|1|1A|A|4048
6IP5|1|1A|U|4049
6IP5|1|1A|A|4050
6IP5|1|1A|C|4051
6IP5|1|1A|C|4052
6IP5|1|1A|A|4053
6IP5|1|1A|C|4054
6IP5|1|1A|U|4055
6IP5|1|1A|A|4056
6IP5|1|1A|C|4057
6IP5|1|1A|U|4058
6IP5|1|1A|C|4059
6IP5|1|1A|U|4060
6IP5|1|1A|G|4061
6IP5|1|1A|A|4062
6IP5|1|1A|U|4063
6IP5|1|1A|C|4064
6IP5|1|1A|G|4065
6IP5|1|1A|U|4066
6IP5|1|1A|U|4067
6IP5|1|1A|U|4068
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2c
- 60S ribosomal protein L36
- Chain 2l
- 60S ribosomal protein L10a
- Chain 2o
- 40S ribosomal protein S3a
- Chain zu
- Transfer RNA; tRNA
Coloring options: