HL_6IP5_057

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGCCCCGAGGGGCUC

Length

16 nucleotides

Bulged bases

6IP5|1|1A|A|4105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_057 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1797

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP5|1|1A|G|4097
6IP5|1|1A|A|4098
6IP5|1|1A|G|4099
6IP5|1|1A|C|4100
6IP5|1|1A|C|4101
6IP5|1|1A|C|4102
6IP5|1|1A|C|4103
6IP5|1|1A|G|4104
6IP5|1|1A|A|4105
6IP5|1|1A|G|4106
6IP5|1|1A|G|4107
6IP5|1|1A|G|4108
6IP5|1|1A|G|4109
6IP5|1|1A|C|4110
6IP5|1|1A|U|4111
6IP5|1|1A|C|4112

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2a

60S ribosomal protein L34

Chain 2o

40S ribosomal protein S3a