HL_6IP5_067

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

6IP5|1|1A|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_067 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3803

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

6IP5|1|1A|A|4473
6IP5|1|1A|A|4474
6IP5|1|1A|G|4475
6IP5|1|1A|C|4476
6IP5|1|1A|A|4477
6IP5|1|1A|G|4478
6IP5|1|1A|A|4479
6IP5|1|1A|A|4480
6IP5|1|1A|U|4481
6IP5|1|1A|U|4482

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2g

Ubiquitin-60S ribosomal protein L40