HL_6IP5_087

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6IP5|1|2m|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_087 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1567

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP5|1|2m|G|288
6IP5|1|2m|G|289
6IP5|1|2m|U|290
6IP5|1|2m|G|291
6IP5|1|2m|A|292
6IP5|1|2m|C|293
6IP5|1|2m|U|294
6IP5|1|2m|C|295

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6