HL_6IP5_092

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6IP5|1|2m|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_092 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1407

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6IP5|1|2m|C|462
6IP5|1|2m|C|463
6IP5|1|2m|A|464
6IP5|1|2m|A|465
6IP5|1|2m|G|466
6IP5|1|2m|G|467

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2P

60S ribosomal protein L23

Chain 3H

40S ribosomal protein S6