HL_6IP5_095

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCACUUUAAAUCCUUCCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|U|566
6IP5|1|2m|C|567
6IP5|1|2m|C|568
6IP5|1|2m|A|569
6IP5|1|2m|C|570
6IP5|1|2m|U|571
6IP5|1|2m|U|572
6IP5|1|2m|U|573
6IP5|1|2m|A|574
6IP5|1|2m|A|575
6IP5|1|2m|A|576
6IP5|1|2m|U|577
6IP5|1|2m|C|578
6IP5|1|2m|C|579
6IP5|1|2m|U|580
6IP5|1|2m|U|581
6IP5|1|2m|C|582
6IP5|1|2m|C|583
6IP5|1|2m|G|584

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24