HL_6IP5_099

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCG

Length

18 nucleotides

Bulged bases

6IP5|1|2m|G|891, 6IP5|1|2m|G|894, 6IP5|1|2m|G|895, 6IP5|1|2m|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|C|884
6IP5|1|2m|U|885
6IP5|1|2m|A|886
6IP5|1|2m|U|887
6IP5|1|2m|U|888
6IP5|1|2m|U|889
6IP5|1|2m|U|890
6IP5|1|2m|G|891
6IP5|1|2m|U|892
6IP5|1|2m|U|893
6IP5|1|2m|G|894
6IP5|1|2m|G|895
6IP5|1|2m|U|896
6IP5|1|2m|U|897
6IP5|1|2m|U|898
6IP5|1|2m|U|899
6IP5|1|2m|C|900
6IP5|1|2m|G|901

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6