HL_6IP5_106

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6IP5|1|2m|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_106 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1399

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP5|1|2m|G|1245
6IP5|1|2m|A|1246
6IP5|1|2m|C|1247
6IP5|1|2m|U|1248
6IP5|1|2m|C|1249
6IP5|1|2m|A|1250
6IP5|1|2m|A|1251
6IP5|1|2m|C|1252
6IP5|1|2m|A|1253
6IP5|1|2m|C|1254

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16

Chain zy

Transfer RNA; tRNA