HL_6IP5_110

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGCGGUCG

Length

10 nucleotides

Bulged bases

6IP5|1|2m|C|1423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_110 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1234

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP5|1|2m|C|1419
6IP5|1|2m|G|1420
6IP5|1|2m|A|1421
6IP5|1|2m|G|1422
6IP5|1|2m|C|1423
6IP5|1|2m|G|1424
6IP5|1|2m|G|1425
6IP5|1|2m|U|1426
6IP5|1|2m|C|1427
6IP5|1|2m|G|1428

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2x

40S ribosomal protein S16