HL_6IP5_116

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

6IP5|1|2m|G|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_116 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3405

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6IP5|1|2m|G|1846
6IP5|1|2m|G|1847
6IP5|1|2m|U|1848
6IP5|1|2m|G|1849
6IP5|1|2m|A|1850
6IP5|1|2m|A|1851
6IP5|1|2m|C|1852
6IP5|1|2m|C|1853

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

60S ribosomal protein L41

Chain 3L

40S ribosomal protein S14