HL_6IP5_117

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAGGGGUAUG

Length

11 nucleotides

Bulged bases

6IP5|1|zu|G|16, 6IP5|1|zu|G|17, 6IP5|1|zu|G|18, 6IP5|1|zu|U|19, 6IP5|1|zu|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_117 not in the Motif Atlas

Homologous match to HL_5IB8_207

Geometric discrepancy: 0.4675

The information below is about HL_5IB8_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|zu|C|12
6IP5|1|zu|U|13
6IP5|1|zu|A|14
6IP5|1|zu|G|15
6IP5|1|zu|G|16
6IP5|1|zu|G|17
6IP5|1|zu|G|18
6IP5|1|zu|U|19
6IP5|1|zu|A|20
6IP5|1|zu|U|21
6IP5|1|zu|G|22

Current chains

Chain zu

P-site tRNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 3L

40S ribosomal protein S14