HL_6IP5_118
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAGGGUG
- Length
- 9 nucleotides
- Bulged bases
- 6IP5|1|zu|U|32, 6IP5|1|zu|A|33, 6IP5|1|zu|G|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP5_118 not in the Motif Atlas
- Homologous match to HL_5E81_220
- Geometric discrepancy: 0.5156
- The information below is about HL_5E81_220
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
6IP5|1|zu|C|30
6IP5|1|zu|U|31
6IP5|1|zu|U|32
6IP5|1|zu|A|33
6IP5|1|zu|G|34
6IP5|1|zu|G|35
6IP5|1|zu|G|36
6IP5|1|zu|U|37
6IP5|1|zu|G|38
Current chains
- Chain zu
- P-site tRNA
Nearby chains
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2r
- 40S ribosomal protein S5
- Chain 3D
- 40S ribosomal protein S28
- Chain 3L
- 40S ribosomal protein S14
- Chain zv
- mRNA
- Chain zy
- Transfer RNA; tRNA
Coloring options: