HL_6IP5_121
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAGGGUG
- Length
- 9 nucleotides
- Bulged bases
- 6IP5|1|zy|U|32
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP5_121 not in the Motif Atlas
- Homologous match to HL_6UGG_005
- Geometric discrepancy: 0.1579
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
6IP5|1|zy|C|30
6IP5|1|zy|U|31
6IP5|1|zy|U|32
6IP5|1|zy|A|33
6IP5|1|zy|G|34
6IP5|1|zy|G|35
6IP5|1|zy|G|36
6IP5|1|zy|U|37
6IP5|1|zy|G|38
Current chains
- Chain zy
- P-site tRNA
Nearby chains
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2x
- 40S ribosomal protein S16
- Chain zu
- Transfer RNA; tRNA
- Chain zv
- mRNA
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