HL_6IP5_124
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCUUGGGGCCGAAACGAUCUCAAC
- Length
- 25 nucleotides
- Bulged bases
- 6IP5|1|1A|U|1757, 6IP5|1|1A|G|1764, 6IP5|1|1A|A|1765, 6IP5|1|1A|A|1766, 6IP5|1|1A|A|1767, 6IP5|1|1A|G|1769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP5|1|1A|G|1753
6IP5|1|1A|U|1754
6IP5|1|1A|C|1755
6IP5|1|1A|U|1756
6IP5|1|1A|U|1757
6IP5|1|1A|G|1758
6IP5|1|1A|G|1759
6IP5|1|1A|G|1760
6IP5|1|1A|G|1761
6IP5|1|1A|C|1762
6IP5|1|1A|C|1763
6IP5|1|1A|G|1764
6IP5|1|1A|A|1765
6IP5|1|1A|A|1766
6IP5|1|1A|A|1767
6IP5|1|1A|C|1768
6IP5|1|1A|G|1769
6IP5|1|1A|A|1770
6IP5|1|1A|U|1771
6IP5|1|1A|C|1772
6IP5|1|1A|U|1773
6IP5|1|1A|C|1774
6IP5|1|1A|A|1775
6IP5|1|1A|A|1776
6IP5|1|1A|C|1777
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1G
- 60S ribosomal protein L5
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2E
- 60S ribosomal protein L11
- Chain 2w
- 40S ribosomal protein S15
- Chain 2z
- 40S ribosomal protein S18
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