HL_6IP5_128

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

6IP5|1|2m|G|836, 6IP5|1|2m|G|838, 6IP5|1|2m|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_128 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2467

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6IP5|1|2m|G|832
6IP5|1|2m|C|833
6IP5|1|2m|C|834
6IP5|1|2m|C|835
6IP5|1|2m|G|836
6IP5|1|2m|A|837
6IP5|1|2m|G|838
6IP5|1|2m|C|839
6IP5|1|2m|C|840
6IP5|1|2m|G|841
6IP5|1|2m|C|842

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24