HL_6IP5_129
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGGACUGUCCCCAGUGCGC
- Length
- 20 nucleotides
- Bulged bases
- 6IP5|1|1A|C|1172, 6IP5|1|1A|G|1178, 6IP5|1|1A|U|1179, 6IP5|1|1A|C|1181, 6IP5|1|1A|C|1182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP5|1|1A|G|1171
6IP5|1|1A|C|1172
6IP5|1|1A|G|1173
6IP5|1|1A|G|1174
6IP5|1|1A|A|1175
6IP5|1|1A|C|1176
6IP5|1|1A|U|1177
6IP5|1|1A|G|1178
6IP5|1|1A|U|1179
6IP5|1|1A|C|1180
6IP5|1|1A|C|1181
6IP5|1|1A|C|1182
6IP5|1|1A|C|1183
6IP5|1|1A|A|1184
6IP5|1|1A|G|1185
6IP5|1|1A|U|1186
6IP5|1|1A|G|1187
6IP5|1|1A|C|1188
6IP5|1|1A|G|1189
6IP5|1|1A|C|1190
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2D
- 60S ribosomal protein L10-like
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