HL_6IP5_132

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6IP5|1|2m|G|821, 6IP5|1|2m|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_132 not in the Motif Atlas

Homologous match to HL_8CRE_207

Geometric discrepancy: 0.2638

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6IP5|1|2m|U|820
6IP5|1|2m|G|821
6IP5|1|2m|U|822
6IP5|1|2m|U|823
6IP5|1|2m|C|824
6IP5|1|2m|A|825
6IP5|1|2m|A|826
6IP5|1|2m|A|827
6IP5|1|2m|G|828

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24