HL_6IP6_005

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6IP6|1|1A|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.25

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6IP6|1|1A|U|204
6IP6|1|1A|C|205
6IP6|1|1A|U|206
6IP6|1|1A|G|207
6IP6|1|1A|A|208
6IP6|1|1A|U|209
6IP6|1|1A|C|210
6IP6|1|1A|G|211

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2S

60S ribosomal protein L26