6IP6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6IP6_026 | 1/1A/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6IP6_054 | 1/1A/3796:3804 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6IP6_067 | 1/1A/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6IP6_068 | 1/1A/4495:4505 | No text annotation | geometric HL_1KH6_003 HL_33487.1 | |
| HL_6IP6_074 | 1/1A/4907:4914 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_6IP6_083 | 1/2m/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6IP6_096 | 1/2m/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6IP6_106 | 1/2m/1245:1254 | No text annotation | geometric HL_4WF9_011 HL_75660.7 | |
| HL_6IP6_116 | 1/2m/1847:1852 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6IP6_117 | 1/zy/12:22 | No text annotation | homologous HL_8JOZ_001 HL_55043.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6IP6_001 | No text annotation | ||
| HL_6IP6_002 | No text annotation | ||
| HL_6IP6_003 | No text annotation | ||
| HL_6IP6_004 | No text annotation | ||
| HL_6IP6_005 | T-loop with 2 stacked bulged bases | ||
| HL_6IP6_006 | No text annotation | ||
| HL_6IP6_007 | T-loop with unstacked turn | ||
| HL_6IP6_008 | No text annotation | ||
| HL_6IP6_009 | Pseudoknot geometry | ||
| HL_6IP6_010 | GNRA | ||
| HL_6IP6_011 | GNRA | ||
| HL_6IP6_012 | No text annotation | ||
| HL_6IP6_013 | No text annotation | ||
| HL_6IP6_014 | No text annotation | ||
| HL_6IP6_015 | No text annotation | ||
| HL_6IP6_135 | No text annotation | ||
| HL_6IP6_016 | No text annotation | ||
| HL_6IP6_017 | T-loop with 2 stacked bulged bases | ||
| HL_6IP6_018 | No text annotation | ||
| HL_6IP6_136 | No text annotation | ||
| HL_6IP6_019 | GNRA | ||
| HL_6IP6_020 | No text annotation | ||
| HL_6IP6_021 | No text annotation | ||
| HL_6IP6_022 | Mini UNCG | ||
| HL_6IP6_023 | GNRA | ||
| HL_6IP6_024 | No text annotation | ||
| HL_6IP6_025 | No text annotation | ||
| HL_6IP6_027 | No text annotation | ||
| HL_6IP6_028 | No text annotation | ||
| HL_6IP6_029 | GNRA | ||
| HL_6IP6_030 | No text annotation | ||
| HL_6IP6_031 | No text annotation | ||
| HL_6IP6_032 | No text annotation | ||
| HL_6IP6_033 | GNRA | ||
| HL_6IP6_034 | T-loop with 2 stacked bulged bases | ||
| HL_6IP6_035 | Mini UNCG | ||
| HL_6IP6_036 | GNRA variation | ||
| HL_6IP6_037 | No text annotation | ||
| HL_6IP6_038 | No text annotation | ||
| HL_6IP6_039 | No text annotation | ||
| HL_6IP6_040 | GNRA | ||
| HL_6IP6_041 | No text annotation | ||
| HL_6IP6_042 | No text annotation | ||
| HL_6IP6_043 | No text annotation | ||
| HL_6IP6_044 | No text annotation | ||
| HL_6IP6_045 | No text annotation | ||
| HL_6IP6_046 | GNRA | ||
| HL_6IP6_047 | UNCG | ||
| HL_6IP6_048 | No text annotation | ||
| HL_6IP6_049 | No text annotation | ||
| HL_6IP6_050 | No text annotation | ||
| HL_6IP6_051 | GNRA | ||
| HL_6IP6_052 | GNRA | ||
| HL_6IP6_053 | No text annotation | ||
| HL_6IP6_055 | No text annotation | ||
| HL_6IP6_056 | No text annotation | ||
| HL_6IP6_127 | No text annotation | ||
| HL_6IP6_057 | No text annotation | ||
| HL_6IP6_058 | No text annotation | ||
| HL_6IP6_059 | No text annotation | ||
| HL_6IP6_128 | No text annotation | ||
| HL_6IP6_060 | No text annotation | ||
| HL_6IP6_061 | No text annotation | ||
| HL_6IP6_062 | Pseudoknot geometry | ||
| HL_6IP6_063 | No text annotation | ||
| HL_6IP6_064 | GNRA | ||
| HL_6IP6_065 | No text annotation | ||
| HL_6IP6_066 | No text annotation | ||
| HL_6IP6_129 | No text annotation | ||
| HL_6IP6_069 | GNRA | ||
| HL_6IP6_070 | GNRA | ||
| HL_6IP6_071 | Ribsomal LSU H95 | ||
| HL_6IP6_072 | No text annotation | ||
| HL_6IP6_073 | No text annotation | ||
| HL_6IP6_075 | No text annotation | ||
| HL_6IP6_076 | No text annotation | ||
| HL_6IP6_130 | No text annotation | ||
| HL_6IP6_077 | No text annotation | ||
| HL_6IP6_078 | GNRA | ||
| HL_6IP6_079 | No text annotation | ||
| HL_6IP6_080 | No text annotation | ||
| HL_6IP6_081 | No text annotation | ||
| HL_6IP6_082 | No text annotation | ||
| HL_6IP6_084 | No text annotation | ||
| HL_6IP6_085 | GNRA related | ||
| HL_6IP6_086 | No text annotation | ||
| HL_6IP6_087 | No text annotation | ||
| HL_6IP6_088 | No text annotation | ||
| HL_6IP6_089 | No text annotation | ||
| HL_6IP6_090 | No text annotation | ||
| HL_6IP6_091 | No text annotation | ||
| HL_6IP6_092 | UNCG | ||
| HL_6IP6_093 | No text annotation | ||
| HL_6IP6_094 | No text annotation | ||
| HL_6IP6_095 | No text annotation | ||
| HL_6IP6_131 | No text annotation | ||
| HL_6IP6_097 | No text annotation | ||
| HL_6IP6_098 | No text annotation | ||
| HL_6IP6_099 | No text annotation | ||
| HL_6IP6_100 | No text annotation | ||
| HL_6IP6_101 | GNRA | ||
| HL_6IP6_102 | No text annotation | ||
| HL_6IP6_132 | No text annotation | ||
| HL_6IP6_103 | No text annotation | ||
| HL_6IP6_104 | GNRA | ||
| HL_6IP6_105 | GNRA | ||
| HL_6IP6_107 | Anticodon loop related | ||
| HL_6IP6_108 | GNRA | ||
| HL_6IP6_109 | No text annotation | ||
| HL_6IP6_110 | No text annotation | ||
| HL_6IP6_111 | No text annotation | ||
| HL_6IP6_112 | GNRA | ||
| HL_6IP6_113 | No text annotation | ||
| HL_6IP6_114 | No text annotation | ||
| HL_6IP6_115 | No text annotation | ||
| HL_6IP6_133 | No text annotation | ||
| HL_6IP6_118 | tRNA anticodon loop | ||
| HL_6IP6_119 | T-loop with 2 stacked bulged bases | ||
| HL_6IP6_120 | No text annotation | ||
| HL_6IP6_121 | No text annotation | ||
| HL_6IP6_122 | No text annotation | ||
| HL_6IP6_123 | No text annotation | ||
| HL_6IP6_134 | No text annotation | ||
| HL_6IP6_124 | No text annotation | ||
| HL_6IP6_125 | No text annotation | ||
| HL_6IP6_126 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6IP6_029 | 1/1A/709:710, 1/1A/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_6IP6_032 | 1/1A/732:735, 1/1A/928:937 | No text annotation | ||
| IL_6IP6_033 | 1/1A/737:740, 1/1A/925:926 | No text annotation | ||
| IL_6IP6_034 | 1/1A/740:742, 1/1A/922:925 | No text annotation | ||
| IL_6IP6_072 | 1/1A/1911:1918, 1/1A/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6IP6_073 | 1/1A/1918:1920, 1/1A/2063:2064 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_6IP6_074 | 1/1A/1920:1922, 1/1A/2062:2063 | No text annotation | ||
| IL_6IP6_075 | 1/1A/1926:1933, 1/1A/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6IP6_076 | 1/1A/1933:1944, 1/1A/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6IP6_095 | 1/1A/2656:2662, 1/1A/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6IP6_110 | 1/1A/3781:3792, 1/1A/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6IP6_124 | 1/1A/4405:4407, 1/1A/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_6IP6_126 | 1/1A/4453:4454, 1/1A/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6IP6_128 | 1/1A/4458:4459, 1/1A/4517:4520 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_6IP6_129 | 1/1A/4466:4468, 1/1A/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6IP6_130 | 1/1A/4468:4470, 1/1A/4485:4489 | No text annotation | ||
| IL_6IP6_134 | 1/1A/4596:4603, 1/1A/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6IP6_139 | 1/1A/4680:4685, 1/1A/4705:4711 | No text annotation | geometric IL_4QLM_002 IL_74322.2 | |
| IL_6IP6_254 | 1/1A/4755:4765, 1/1A/4869:4878 | No text annotation | ||
| IL_6IP6_157 | 1/1B/82:85, 1/1B/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6IP6_161 | 1/2m/34:36, 1/2m/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6IP6_162 | 1/2m/37:40, 1/2m/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_6IP6_163 | 1/2m/41:47, 1/2m/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6IP6_186 | 1/2m/599:608, 1/2m/635:637 | Isolated non-canonical cWW pair | geometric IL_4Y1M_005 IL_71625.2 | |
| IL_6IP6_187 | 1/2m/611:617, 1/2m/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6IP6_190 | 1/2m/673:675, 1/2m/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6IP6_205 | 1/2m/1091:1093, 1/2m/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6IP6_209 | 1/2m/1167:1176, 1/2m/1185:1192 | No text annotation | ||
| IL_6IP6_210 | 1/2m/1203:1205, 1/2m/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.2 | |
| IL_6IP6_216 | 1/2m/1325:1327, 1/2m/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6IP6_262 | 1/2m/1329:1335, 1/2m/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6IP6_218 | 1/2m/1333:1335, 1/2m/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6IP6_230 | 1/2m/1702:1705, 1/2m/1829:1833 | No text annotation | homologous IL_4V88_464 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6IP6_001 | Single bulged C | ||
| IL_6IP6_002 | Single bulged U | ||
| IL_6IP6_003 | Isolated non-canonical cWW pair | ||
| IL_6IP6_004 | No text annotation | ||
| IL_6IP6_005 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6IP6_006 | No text annotation | ||
| IL_6IP6_007 | No text annotation | ||
| IL_6IP6_008 | Single bulged C | ||
| IL_6IP6_009 | No text annotation | ||
| IL_6IP6_266 | No text annotation | ||
| IL_6IP6_267 | Single stack bend | ||
| IL_6IP6_010 | Single stack bend | ||
| IL_6IP6_011 | No text annotation | ||
| IL_6IP6_012 | Single bulged C | ||
| IL_6IP6_013 | Single bulged U | ||
| IL_6IP6_014 | Minor groove platform, major groove intercalation | ||
| IL_6IP6_015 | Single bulged A | ||
| IL_6IP6_016 | No text annotation | ||
| IL_6IP6_017 | Triple sheared with non-canonical cWW | ||
| IL_6IP6_018 | No text annotation | ||
| IL_6IP6_019 | Single bulged C | ||
| IL_6IP6_020 | Single bulged C | ||
| IL_6IP6_021 | Isolated cWH basepair | ||
| IL_6IP6_022 | No text annotation | ||
| IL_6IP6_023 | Major groove intercalation | ||
| IL_6IP6_024 | Minor groove platform | ||
| IL_6IP6_025 | No text annotation | ||
| IL_6IP6_026 | Isolated non-canonical cWW pair | ||
| IL_6IP6_247 | Multiple bulged bases | ||
| IL_6IP6_027 | Single bulged A | ||
| IL_6IP6_028 | No text annotation | ||
| IL_6IP6_030 | Multiple bulged bases | ||
| IL_6IP6_031 | No text annotation | ||
| IL_6IP6_035 | No text annotation | ||
| IL_6IP6_036 | Single bulged A | ||
| IL_6IP6_037 | No text annotation | ||
| IL_6IP6_038 | Isolated cWH basepair | ||
| IL_6IP6_039 | Single bulged C | ||
| IL_6IP6_040 | No text annotation | ||
| IL_6IP6_041 | Isolated non-canonical cWW contact | ||
| IL_6IP6_042 | Single bulged G | ||
| IL_6IP6_043 | No text annotation | ||
| IL_6IP6_248 | No text annotation | ||
| IL_6IP6_044 | Major groove intercalation | ||
| IL_6IP6_045 | Triple sheared related | ||
| IL_6IP6_046 | Double sheared | ||
| IL_6IP6_047 | Single bulged A | ||
| IL_6IP6_048 | Single stack bend | ||
| IL_6IP6_049 | No text annotation | ||
| IL_6IP6_050 | Isolated non-canonical cWW pair | ||
| IL_6IP6_051 | No text annotation | ||
| IL_6IP6_052 | Single bulged A | ||
| IL_6IP6_053 | Single bulged G | ||
| IL_6IP6_054 | Triple sheared | ||
| IL_6IP6_055 | Major groove platform with extra cWW | ||
| IL_6IP6_056 | Single bulged U | ||
| IL_6IP6_057 | Multiple bulged bases | ||
| IL_6IP6_058 | Isolated non-canonical cWW pair | ||
| IL_6IP6_059 | No text annotation | ||
| IL_6IP6_060 | No text annotation | ||
| IL_6IP6_061 | Single bulged G | ||
| IL_6IP6_062 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6IP6_063 | Minor groove platform | ||
| IL_6IP6_064 | C-loop | ||
| IL_6IP6_065 | No text annotation | ||
| IL_6IP6_066 | Isolated non-canonical cWW pair | ||
| IL_6IP6_067 | No text annotation | ||
| IL_6IP6_068 | Single bulged G | ||
| IL_6IP6_069 | Isolated non-canonical cWW pair | ||
| IL_6IP6_070 | No text annotation | ||
| IL_6IP6_071 | UAA/GAN | ||
| IL_6IP6_077 | Single bulged U | ||
| IL_6IP6_078 | Kink-turn | ||
| IL_6IP6_249 | No text annotation | ||
| IL_6IP6_079 | Single bulged C | ||
| IL_6IP6_080 | No text annotation | ||
| IL_6IP6_081 | Single bulged A | ||
| IL_6IP6_082 | Kink-turn | ||
| IL_6IP6_083 | Single bulged A | ||
| IL_6IP6_084 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6IP6_250 | No text annotation | ||
| IL_6IP6_085 | No text annotation | ||
| IL_6IP6_086 | UAA/GAN | ||
| IL_6IP6_087 | Single stack bend | ||
| IL_6IP6_088 | No text annotation | ||
| IL_6IP6_089 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_090 | Triple sheared | ||
| IL_6IP6_091 | Single bulged C | ||
| IL_6IP6_092 | Single stack bend | ||
| IL_6IP6_251 | No text annotation | ||
| IL_6IP6_093 | Decoding loop related | ||
| IL_6IP6_094 | Single bulged G | ||
| IL_6IP6_096 | No text annotation | ||
| IL_6IP6_097 | No text annotation | ||
| IL_6IP6_098 | No text annotation | ||
| IL_6IP6_099 | No text annotation | ||
| IL_6IP6_100 | No text annotation | ||
| IL_6IP6_101 | Isolated non-canonical cWW pair | ||
| IL_6IP6_102 | No text annotation | ||
| IL_6IP6_103 | Single bulged A | ||
| IL_6IP6_104 | Kink-turn related | ||
| IL_6IP6_105 | Major groove intercalation | ||
| IL_6IP6_106 | Multiple bulged bases | ||
| IL_6IP6_252 | Isolated non-canonical cWW with bulges | ||
| IL_6IP6_107 | No text annotation | ||
| IL_6IP6_108 | No text annotation | ||
| IL_6IP6_109 | No text annotation | ||
| IL_6IP6_111 | No text annotation | ||
| IL_6IP6_112 | No text annotation | ||
| IL_6IP6_113 | Single bulged U | ||
| IL_6IP6_114 | Decoding loop related | ||
| IL_6IP6_115 | No text annotation | ||
| IL_6IP6_116 | No text annotation | ||
| IL_6IP6_268 | No text annotation | ||
| IL_6IP6_253 | Single bulged A | ||
| IL_6IP6_117 | No text annotation | ||
| IL_6IP6_118 | Isolated tHS basepair with bulges | ||
| IL_6IP6_119 | Isolated non-canonical cWW pair | ||
| IL_6IP6_120 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_121 | Single stack bend | ||
| IL_6IP6_122 | No text annotation | ||
| IL_6IP6_123 | Major groove platform | ||
| IL_6IP6_125 | No text annotation | ||
| IL_6IP6_127 | Isolated non-canonical cWW with bulges | ||
| IL_6IP6_131 | Single bulged A | ||
| IL_6IP6_132 | No text annotation | ||
| IL_6IP6_133 | Isolated non-canonical cWW pair | ||
| IL_6IP6_135 | No text annotation | ||
| IL_6IP6_136 | No text annotation | ||
| IL_6IP6_137 | Isolated non-canonical cWW pair | ||
| IL_6IP6_138 | Multiple bulged bases | ||
| IL_6IP6_140 | Isolated non-canonical cWW pair | ||
| IL_6IP6_141 | No text annotation | ||
| IL_6IP6_142 | No text annotation | ||
| IL_6IP6_143 | No text annotation | ||
| IL_6IP6_144 | Single bulged C | ||
| IL_6IP6_145 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_146 | Isolated non-canonical cWW pair | ||
| IL_6IP6_147 | No text annotation | ||
| IL_6IP6_269 | No text annotation | ||
| IL_6IP6_148 | No text annotation | ||
| IL_6IP6_149 | No text annotation | ||
| IL_6IP6_150 | No text annotation | ||
| IL_6IP6_151 | Single bulged A | ||
| IL_6IP6_152 | Minor groove platform related | ||
| IL_6IP6_153 | No text annotation | ||
| IL_6IP6_154 | Symmetric double minor groove platform | ||
| IL_6IP6_155 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | ||
| IL_6IP6_270 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6IP6_156 | Isolated non-canonical cWW pair | ||
| IL_6IP6_158 | Isolated non-canonical cWW pair | ||
| IL_6IP6_159 | Isolated non-canonical cWW pair | ||
| IL_6IP6_160 | Isolated non-canonical cWW pair | ||
| IL_6IP6_164 | Minor groove platform | ||
| IL_6IP6_165 | No text annotation | ||
| IL_6IP6_166 | No text annotation | ||
| IL_6IP6_255 | No text annotation | ||
| IL_6IP6_167 | Isolated non-canonical cWW pair | ||
| IL_6IP6_256 | No text annotation | ||
| IL_6IP6_168 | No text annotation | ||
| IL_6IP6_169 | No text annotation | ||
| IL_6IP6_170 | Single stack bend | ||
| IL_6IP6_171 | tWH-tWH-tHW-tHW | ||
| IL_6IP6_172 | Isolated cWH basepair | ||
| IL_6IP6_173 | No text annotation | ||
| IL_6IP6_174 | No text annotation | ||
| IL_6IP6_175 | No text annotation | ||
| IL_6IP6_176 | Kink-turn with non-sequential stacking | ||
| IL_6IP6_177 | No text annotation | ||
| IL_6IP6_178 | No text annotation | ||
| IL_6IP6_179 | Isolated cWH basepair | ||
| IL_6IP6_180 | Isolated near basepair | ||
| IL_6IP6_181 | Single bulged U | ||
| IL_6IP6_182 | C-loop | ||
| IL_6IP6_183 | Stack and bulge | ||
| IL_6IP6_184 | No text annotation | ||
| IL_6IP6_185 | No text annotation | ||
| IL_6IP6_188 | Isolated non-canonical cWW pair | ||
| IL_6IP6_189 | No text annotation | ||
| IL_6IP6_191 | tSH-tHW-tHS | ||
| IL_6IP6_257 | No text annotation | ||
| IL_6IP6_192 | No text annotation | ||
| IL_6IP6_271 | No text annotation | ||
| IL_6IP6_193 | Isolated non-canonical cWW pair | ||
| IL_6IP6_194 | No text annotation | ||
| IL_6IP6_195 | No text annotation | ||
| IL_6IP6_196 | No text annotation | ||
| IL_6IP6_197 | Major groove platform; stack outside cWW | ||
| IL_6IP6_258 | No text annotation | ||
| IL_6IP6_198 | Stack and bulge | ||
| IL_6IP6_199 | Triple non-canonical cWW pairs | ||
| IL_6IP6_200 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_201 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_202 | Kink-turn | ||
| IL_6IP6_203 | No text annotation | ||
| IL_6IP6_272 | No text annotation | ||
| IL_6IP6_204 | tSH-tHW-tHS | ||
| IL_6IP6_206 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_207 | Isolated non-canonical cWW pair | ||
| IL_6IP6_208 | Minor groove platform | ||
| IL_6IP6_211 | Single bulged G | ||
| IL_6IP6_259 | No text annotation | ||
| IL_6IP6_212 | C-loop | ||
| IL_6IP6_213 | Isolated non-canonical cWW pair | ||
| IL_6IP6_214 | Minor groove platform | ||
| IL_6IP6_215 | Isolated cWH basepair | ||
| IL_6IP6_260 | No text annotation | ||
| IL_6IP6_217 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_261 | Isolated cWS basepair | ||
| IL_6IP6_219 | Single bulged A | ||
| IL_6IP6_220 | Isolated cWH basepair | ||
| IL_6IP6_221 | Minor groove platform | ||
| IL_6IP6_222 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_223 | No text annotation | ||
| IL_6IP6_263 | No text annotation | ||
| IL_6IP6_224 | No text annotation | ||
| IL_6IP6_225 | Isolated non-canonical cWW pair | ||
| IL_6IP6_264 | No text annotation | ||
| IL_6IP6_226 | No text annotation | ||
| IL_6IP6_227 | Isolated non-canonical cWW pair | ||
| IL_6IP6_228 | No text annotation | ||
| IL_6IP6_229 | No text annotation | ||
| IL_6IP6_231 | Isolated non-canonical cWW pair | ||
| IL_6IP6_232 | Tandem non-canonical cWW pairs | ||
| IL_6IP6_233 | Isolated non-canonical cWW pair | ||
| IL_6IP6_234 | Double sheared | ||
| IL_6IP6_235 | Single bulged U | ||
| IL_6IP6_236 | Isolated non-canonical cWW pair | ||
| IL_6IP6_237 | Double sheared | ||
| IL_6IP6_238 | Isolated non-canonical cWW pair | ||
| IL_6IP6_239 | Triple sheared | ||
| IL_6IP6_240 | No text annotation | ||
| IL_6IP6_241 | No text annotation | ||
| IL_6IP6_242 | Single stack bend | ||
| IL_6IP6_243 | No text annotation | ||
| IL_6IP6_244 | No text annotation | ||
| IL_6IP6_245 | No text annotation | ||
| IL_6IP6_265 | No text annotation | ||
| IL_6IP6_246 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6IP6_032 | 1/1A/1726:1727, 1/1A/1802:1806, 1/1A/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_6IP6_012 | 1/1A/4463:4466, 1/1A/4491:4493, 1/1A/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6IP6_038 | 1/1A/4748:4754, 1/1A/4879:4890, 1/1A/4930:4951 | No text annotation | ||
| J3_6IP6_025 | 1/2m/1340:1345, 1/2m/1384:1389, 1/2m/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J4_6IP6_010 | 1/1A/4587:4590, 1/1A/4620:4621, 1/1A/4676:4679, 1/1A/4712:4715 | No text annotation | ||
| J4_6IP6_012 | 1/2m/671:673, 1/2m/1032:1037, 1/2m/1078:1089, 1/2m/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_6IP6_005 | 1/1A/3902:3910, 1/1A/4392:4403, 1/1A/4440:4453, 1/1A/4528:4534, 1/1A/4552:4558 | No text annotation | ||
| J5_6IP6_008 | 1/2m/53:56, 1/2m/89:96, 1/2m/434:436, 1/2m/457:459, 1/2m/470:474 | No text annotation | homologous J5_8C3A_020 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6IP6_001 | No text annotation | ||
| J3_6IP6_042 | No text annotation | ||
| J3_6IP6_029 | No text annotation | ||
| J3_6IP6_002 | No text annotation | ||
| J3_6IP6_030 | No text annotation | ||
| J3_6IP6_031 | No text annotation | ||
| J3_6IP6_003 | No text annotation | ||
| J3_6IP6_004 | No text annotation | ||
| J3_6IP6_043 | No text annotation | ||
| J3_6IP6_005 | No text annotation | ||
| J3_6IP6_006 | No text annotation | ||
| J3_6IP6_007 | No text annotation | ||
| J3_6IP6_008 | No text annotation | ||
| J3_6IP6_033 | No text annotation | ||
| J3_6IP6_034 | No text annotation | ||
| J3_6IP6_009 | No text annotation | ||
| J3_6IP6_035 | No text annotation | ||
| J3_6IP6_010 | Kink-turn 3-way junction | ||
| J3_6IP6_036 | No text annotation | ||
| J3_6IP6_037 | No text annotation | ||
| J3_6IP6_011 | No text annotation | ||
| J3_6IP6_013 | No text annotation | ||
| J3_6IP6_014 | No text annotation | ||
| J3_6IP6_015 | No text annotation | ||
| J3_6IP6_016 | No text annotation | ||
| J3_6IP6_017 | No text annotation | ||
| J3_6IP6_039 | No text annotation | ||
| J3_6IP6_018 | No text annotation | ||
| J3_6IP6_019 | No text annotation | ||
| J3_6IP6_020 | No text annotation | ||
| J3_6IP6_021 | No text annotation | ||
| J3_6IP6_022 | No text annotation | ||
| J3_6IP6_023 | No text annotation | ||
| J3_6IP6_024 | No text annotation | ||
| J3_6IP6_040 | No text annotation | ||
| J3_6IP6_026 | No text annotation | ||
| J3_6IP6_027 | No text annotation | ||
| J3_6IP6_041 | No text annotation | ||
| J3_6IP6_028 | No text annotation | ||
| J4_6IP6_017 | No text annotation | ||
| J4_6IP6_001 | No text annotation | ||
| J4_6IP6_002 | No text annotation | ||
| J4_6IP6_003 | No text annotation | ||
| J4_6IP6_004 | No text annotation | ||
| J4_6IP6_005 | No text annotation | ||
| J4_6IP6_018 | No text annotation | ||
| J4_6IP6_006 | No text annotation | ||
| J4_6IP6_007 | No text annotation | ||
| J4_6IP6_008 | No text annotation | ||
| J4_6IP6_009 | No text annotation | ||
| J4_6IP6_011 | No text annotation | ||
| J4_6IP6_019 | No text annotation | ||
| J4_6IP6_013 | tRNA junction | ||
| J4_6IP6_020 | No text annotation | ||
| J4_6IP6_014 | No text annotation | ||
| J4_6IP6_015 | No text annotation | ||
| J4_6IP6_016 | No text annotation | ||
| J5_6IP6_001 | No text annotation | ||
| J5_6IP6_010 | No text annotation | ||
| J5_6IP6_002 | No text annotation | ||
| J5_6IP6_003 | No text annotation | ||
| J5_6IP6_004 | No text annotation | ||
| J5_6IP6_006 | No text annotation | ||
| J5_6IP6_007 | No text annotation | ||
| J5_6IP6_011 | No text annotation | ||
| J5_6IP6_009 | No text annotation | ||
| J6_6IP6_001 | No text annotation | ||
| J6_6IP6_002 | No text annotation | ||
| J6_6IP6_003 | No text annotation | ||
| J7_6IP6_001 | No text annotation |
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