HL_6IP6_014

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCCCGGCGCGCCGG

Length

14 nucleotides

Bulged bases

6IP6|1|1A|C|991, 6IP6|1|1A|C|995, 6IP6|1|1A|G|996, 6IP6|1|1A|C|1047

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|U|989
6IP6|1|1A|C|990
6IP6|1|1A|C|991
6IP6|1|1A|C|992
6IP6|1|1A|G|993
6IP6|1|1A|G|994
6IP6|1|1A|C|995
6IP6|1|1A|G|996
6IP6|1|1A|C|1047
6IP6|1|1A|G|1048
6IP6|1|1A|C|1049
6IP6|1|1A|C|1050
6IP6|1|1A|G|1051
6IP6|1|1A|G|1064

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6