HL_6IP6_029

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6IP6|1|1A|G|1869

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_029 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.125

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP6|1|1A|G|1864
6IP6|1|1A|G|1865
6IP6|1|1A|U|1866
6IP6|1|1A|A|1867
6IP6|1|1A|A|1868
6IP6|1|1A|G|1869
6IP6|1|1A|C|1870

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like