Loop HL_6IP6

3D structure

PDB id: 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

Loop

Sequence: GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC
Length: 50 nucleotides
Bulged bases: 6IP6|1|1A|U|1980, 6IP6|1|1A|G|1981, 6IP6|1|1A|A|1984, 6IP6|1|1A|G|1988, 6IP6|1|1A|U|1992, 6IP6|1|1A|U|1997, 6IP6|1|1A|A|1998, 6IP6|1|1A|A|2009, 6IP6|1|1A|C|2011
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6IP6|1|1A|G|1969
6IP6|1|1A|A|1970
6IP6|1|1A|C|1971
6IP6|1|1A|G|1972
6IP6|1|1A|G|1973
6IP6|1|1A|U|1974
6IP6|1|1A|G|1975
6IP6|1|1A|G|1976
6IP6|1|1A|C|1977
6IP6|1|1A|C|1978
6IP6|1|1A|A|1979
6IP6|1|1A|U|1980
6IP6|1|1A|G|1981
6IP6|1|1A|G|1982
6IP6|1|1A|A|1983
6IP6|1|1A|A|1984
6IP6|1|1A|G|1985
6IP6|1|1A|U|1986
6IP6|1|1A|C|1987
6IP6|1|1A|G|1988
6IP6|1|1A|G|1989
6IP6|1|1A|A|1990
6IP6|1|1A|A|1991
6IP6|1|1A|U|1992
6IP6|1|1A|C|1993
6IP6|1|1A|C|1994
6IP6|1|1A|G|1995
6IP6|1|1A|C|1996
6IP6|1|1A|U|1997
6IP6|1|1A|A|1998
6IP6|1|1A|A|1999
6IP6|1|1A|G|2000
6IP6|1|1A|G|2001
6IP6|1|1A|A|2002
6IP6|1|1A|G|2003
6IP6|1|1A|U|2004
6IP6|1|1A|G|2005
6IP6|1|1A|U|2006
6IP6|1|1A|G|2007
6IP6|1|1A|U|2008
6IP6|1|1A|A|2009
6IP6|1|1A|A|2010
6IP6|1|1A|C|2011
6IP6|1|1A|A|2012
6IP6|1|1A|A|2013
6IP6|1|1A|C|2014
6IP6|1|1A|U|2015
6IP6|1|1A|C|2016
6IP6|1|1A|A|2017
6IP6|1|1A|C|2018

Current chains

Chain 1A: 28S ribosomal RNA

Nearby chains

Chain 2D: 60S ribosomal protein L10-like
Chain 2g: Ubiquitin-60S ribosomal protein L40

HL_6IP6_031