HL_6IP6_034
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_034 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1812
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6IP6|1|1A|A|2376
6IP6|1|1A|C|2377
6IP6|1|1A|G|2378
6IP6|1|1A|A|2379
6IP6|1|1A|G|2380
6IP6|1|1A|A|2381
6IP6|1|1A|A|2382
6IP6|1|1A|C|2383
6IP6|1|1A|U|2384
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2J
- 60S ribosomal protein L17
- Chain 2L
- 60S ribosomal protein L19
- Chain 2X
- 60S ribosomal protein L31
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