HL_6IP6_035

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6IP6|1|1A|G|2421, 6IP6|1|1A|U|2425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_035 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2447

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6IP6|1|1A|A|2420
6IP6|1|1A|G|2421
6IP6|1|1A|C|2422
6IP6|1|1A|A|2423
6IP6|1|1A|G|2424
6IP6|1|1A|U|2425
6IP6|1|1A|U|2426

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2J

60S ribosomal protein L17

Chain 2L

60S ribosomal protein L19

Chain 2f

60S ribosomal protein L39