HL_6IP6_041
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 6IP6|1|1A|U|2631
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_041 not in the Motif Atlas
- Homologous match to HL_8C3A_037
- Geometric discrepancy: 0.2439
- The information below is about HL_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6IP6|1|1A|G|2624
6IP6|1|1A|U|2625
6IP6|1|1A|U|2626
6IP6|1|1A|C|2627
6IP6|1|1A|U|2628
6IP6|1|1A|C|2629
6IP6|1|1A|U|2630
6IP6|1|1A|U|2631
6IP6|1|1A|U|2632
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2O
- 60S ribosomal protein L22
Coloring options: