HL_6IP6_048

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGUCGGUCGCGGCCGGCGCCUAGC

Length

25 nucleotides

Bulged bases

6IP6|1|1A|G|2903, 6IP6|1|1A|G|2910, 6IP6|1|1A|C|3584, 6IP6|1|1A|U|3595, 6IP6|1|1A|A|3596

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|G|2901
6IP6|1|1A|G|2902
6IP6|1|1A|G|2903
6IP6|1|1A|U|2904
6IP6|1|1A|C|2905
6IP6|1|1A|G|2906
6IP6|1|1A|G|2907
6IP6|1|1A|U|2908
6IP6|1|1A|C|2909
6IP6|1|1A|G|2910
6IP6|1|1A|C|3584
6IP6|1|1A|G|3585
6IP6|1|1A|G|3586
6IP6|1|1A|C|3587
6IP6|1|1A|C|3588
6IP6|1|1A|G|3589
6IP6|1|1A|G|3590
6IP6|1|1A|C|3591
6IP6|1|1A|G|3592
6IP6|1|1A|C|3593
6IP6|1|1A|C|3594
6IP6|1|1A|U|3595
6IP6|1|1A|A|3596
6IP6|1|1A|G|3597
6IP6|1|1A|C|3598

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11