HL_6IP6_051

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6IP6|1|1A|C|3673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_051 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.4729

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP6|1|1A|C|3668
6IP6|1|1A|G|3669
6IP6|1|1A|C|3670
6IP6|1|1A|G|3671
6IP6|1|1A|G|3672
6IP6|1|1A|C|3673
6IP6|1|1A|G|3674

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2H

60S ribosomal protein L15