HL_6IP6_056

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGACAUGAGUGAUCGUUU

Length

18 nucleotides

Bulged bases

6IP6|1|1A|A|3947

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_056 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1987

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP6|1|1A|A|3945
6IP6|1|1A|G|3946
6IP6|1|1A|A|3947
6IP6|1|1A|C|3948
6IP6|1|1A|A|3949
6IP6|1|1A|U|3950
6IP6|1|1A|G|3951
6IP6|1|1A|A|3952
6IP6|1|1A|G|3953
6IP6|1|1A|U|4060
6IP6|1|1A|G|4061
6IP6|1|1A|A|4062
6IP6|1|1A|U|4063
6IP6|1|1A|C|4064
6IP6|1|1A|G|4065
6IP6|1|1A|U|4066
6IP6|1|1A|U|4067
6IP6|1|1A|U|4068

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2c

60S ribosomal protein L36

Chain 2o

40S ribosomal protein S3a