HL_6IP6_057

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|A|4098
6IP6|1|1A|G|4099
6IP6|1|1A|C|4100
6IP6|1|1A|C|4101
6IP6|1|1A|C|4102
6IP6|1|1A|C|4103
6IP6|1|1A|G|4104
6IP6|1|1A|A|4105
6IP6|1|1A|G|4106
6IP6|1|1A|G|4107
6IP6|1|1A|G|4108
6IP6|1|1A|G|4109
6IP6|1|1A|C|4110
6IP6|1|1A|U|4111

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2a

60S ribosomal protein L34

Chain 2o

40S ribosomal protein S3a