HL_6IP6_059

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6IP6|1|1A|G|4195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_059 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1603

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6IP6|1|1A|C|4193
6IP6|1|1A|U|4194
6IP6|1|1A|G|4195
6IP6|1|1A|G|4196
6IP6|1|1A|G|4197
6IP6|1|1A|G|4198
6IP6|1|1A|C|4199
6IP6|1|1A|G|4200
6IP6|1|1A|G|4201

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2V

60S ribosomal protein L29

Chain zy

Transfer RNA; tRNA