HL_6IP6_068
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GAUUGUUCACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_068 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3601
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|1A|G|4495
6IP6|1|1A|A|4496
6IP6|1|1A|U|4497
6IP6|1|1A|U|4498
6IP6|1|1A|G|4499
6IP6|1|1A|U|4500
6IP6|1|1A|U|4501
6IP6|1|1A|C|4502
6IP6|1|1A|A|4503
6IP6|1|1A|C|4504
6IP6|1|1A|C|4505
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2P
- 60S ribosomal protein L23
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