HL_6IP6_075

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6IP6|1|1A|U|4976

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_075 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1353

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6IP6|1|1A|G|4975
6IP6|1|1A|U|4976
6IP6|1|1A|A|4977
6IP6|1|1A|G|4978
6IP6|1|1A|A|4979
6IP6|1|1A|C|4980
6IP6|1|1A|G|4981
6IP6|1|1A|A|4982
6IP6|1|1A|C|4983

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2J

60S ribosomal protein L17