HL_6IP6_082

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6IP6|1|1C|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_082 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2394

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP6|1|1C|G|121
6IP6|1|1C|G|122
6IP6|1|1C|U|123
6IP6|1|1C|U|124
6IP6|1|1C|C|125
6IP6|1|1C|C|126
6IP6|1|1C|U|127
6IP6|1|1C|C|128
6IP6|1|1C|C|129

Current chains

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2R

60S ribosomal protein L23a